Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015922779.1_cds_XP_016471542.1_63871
CDS Infomation

[gene=LOC107793662] [db_xref=GeneID:107793662] [protein=aspartyl protease family protein 1-like isoform X2] [protein_id=XP_016471542.1] [location=join(1279..1565,1661..1799,2733..2968,3139..3363,3469..3604,3686..3759,3855..3954,4050..4107,4765..4836,4936..5108)] [gbkey=CDS]
Sequence

ATGTCTTCTTTCATTATTTTCTTTCTAACATTGCTCTCAATTCGACAATGCAGTGGCCGT
GTTTTCACATTTGAAATGCACCACCGTTTCTCTGAAACTGTCAAGAAGTGGTCACTGCAG
AAAATAGGTGGTCCACTTCATAATTGGCCGGTCAAAGGAAGTCTTCAGTACTATACTCAG
TTGGCCAACCACGATAAGTTGTTACATGGTAGGAGGCTTTTCAAATTTGACGGACCACTT
ACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTCCTGCATTACACT
ACGGTGACATTGGGGACACCGGGGATGAAGTTTCTTGTGGCGCTTGATACTGGGAGTGAT
TTGTTTTGGGTGCCTTGTGAATGCGGCAAATGTGCTTCTACTGATGATCCTACACTTTAC
AGCTCTGATTTTGAGCTTAGCATATACAGCCTGAACGGTTCTTCAACTAGCAAGCAGGTC
ACCTGCAGTAATAGCTTGTGTACAGAGCGCAATAATTGCCTTGGTGTATATAGCCACTGC
TCTTATTCAGTGTCCTATGTCTCCTCGGAAACTTCAACTTCAGGAATTTTAGTGGATGAT
ATTCTACACTTGAGAACAGAAGACAATGAGGAAACATTTGTCCAGGCGCGTGTGATCTTT
GGTTGTGGACAGGTGCAGACTGGTTCTTTTCTAGATGTTGCAGCTCCAAACGGTTTATTT
GGTCTTGGGCTTGAGAAGATATCAGTCCCTAGTATTCTGTCTCGAGAAGGTTTTATGTCA
GATTCCTTCTCCATGTGCTTTGGTCATGATGGGGCAGGACGAATTAGTTTTGGAGACAAG
GGTAGCTTTGACCAGGAAGAGACCCCTTTTAATATAAACCCATTACACCCAACGTATAAC
ATTTCTGTAGATCAAATACGCGTCGGAACAACTCACATTGATTCAGGTTTTACAGCACTT
TTTGATACCGGAACCTCCTTTACATATCTTGCTGACCTATCCTATACAAAGCTTACAGAG
AGTTTCCATTCTCAAGTATTAGACAAGCGGCGCCCACCTGATCCTAGGATCCCTTTTGAA
TATTGTTATGATATGAGTCCTGATGCAAATACAAGCTTGATTCCTAGTTTAAGCCTAACT
ATAGAAGGGGGAGGCCAACTTGTTGTCTATGATCCAATTATTGTTATATCCATGCAGGGT
CAACTCGTGTATTGCCTGGCCGTTGTGAAGAGTCAAGATCTAAATATAATTGGACAAAAC
TTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAGGCCATTCTCGGTTGGAAGAAG
TTTGATTGTTATGAGATTGAAAAAATAGACCATTTCCCTTCAGAAGCCGTTAATACTACT
CGTGTGCCACCTGCTGTTGCTGTTGGGCCTGGAAATGATGATGCAGAAAAATCAGATGAA
AGGACTACAAATACTCCTCAAAGTTCTTTTGCATCATCAGTTTATCAAACATTTTATTGA

Peptide Sequence

PEP ID

XP_016471542.1
PEP Infomation

PREDICTED: aspartyl protease family protein 1-like isoform X2 [Nicotiana tabacum]
Sequence

MSSFIIFFLTLLSIRQCSGRVFTFEMHHRFSETVKKWSLQKIGGPLHNWPVKGSLQYYTQ
LANHDKLLHGRRLFKFDGPLTFSDGNSTFRISSLGFLHYTTVTLGTPGMKFLVALDTGSD
LFWVPCECGKCASTDDPTLYSSDFELSIYSLNGSSTSKQVTCSNSLCTERNNCLGVYSHC
SYSVSYVSSETSTSGILVDDILHLRTEDNEETFVQARVIFGCGQVQTGSFLDVAAPNGLF
GLGLEKISVPSILSREGFMSDSFSMCFGHDGAGRISFGDKGSFDQEETPFNINPLHPTYN
ISVDQIRVGTTHIDSGFTALFDTGTSFTYLADLSYTKLTESFHSQVLDKRRPPDPRIPFE
YCYDMSPDANTSLIPSLSLTIEGGGQLVVYDPIIVISMQGQLVYCLAVVKSQDLNIIGQN
FMTGYRFVFDREKAILGWKKFDCYEIEKIDHFPSEAVNTTRVPPAVAVGPGNDDAEKSDE
RTTNTPQSSFASSVYQTFY

Transcript Sequence

Gene sequence data has not been registered.